IL_7O7Z_217

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7O7Z|1|B5|A|3395, 7O7Z|1|B5|U|3411, 7O7Z|1|B5|C|3415

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_217 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0734

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7O7Z|1|B5|C|3392
7O7Z|1|B5|G|3393
7O7Z|1|B5|A|3394
7O7Z|1|B5|A|3395
7O7Z|1|B5|G|3396
7O7Z|1|B5|G|3397
*
7O7Z|1|B5|U|3409
7O7Z|1|B5|G|3410
7O7Z|1|B5|U|3411
7O7Z|1|B5|U|3412
7O7Z|1|B5|G|3413
7O7Z|1|B5|A|3414
7O7Z|1|B5|C|3415
7O7Z|1|B5|G|3416

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

Ribosomal protein uL2

Chain Bp

eL43