IL_7O7Z_240

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_240 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.123

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7O7Z|1|B5|G|3702
7O7Z|1|B5|G|3703
7O7Z|1|B5|A|3704
7O7Z|1|B5|G|3705
*
7O7Z|1|B5|C|3766
7O7Z|1|B5|G|3767
7O7Z|1|B5|C|3768
7O7Z|1|B5|C|3769
7O7Z|1|B5|G|3770
7O7Z|1|B5|G|3771
7O7Z|1|B5|U|3772
7O7Z|1|B5|G|3773
7O7Z|1|B5|A|3774
7O7Z|1|B5|A|3775
7O7Z|1|B5|A|3776
7O7Z|1|B5|U|3777
7O7Z|1|B5|A|3778
7O7Z|1|B5|C|3779

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AI

E-site tRNA

Chain Bv

Ribosomal protein uL1