IL_7O7Z_251

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7O7Z|1|B5|U|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_251 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.0621

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7O7Z|1|B5|G|4151
7O7Z|1|B5|U|4152
7O7Z|1|B5|G|4153
*
7O7Z|1|B5|U|4181
7O7Z|1|B5|U|4182
7O7Z|1|B5|U|4183
7O7Z|1|B5|U|4184
7O7Z|1|B5|U|4185

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BI

60S ribosomal protein L10