IL_7O7Z_258
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- UUG*CCAAG
- Length
- 8 nucleotides
- Bulged bases
- 7O7Z|1|B5|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_258 not in the Motif Atlas
- Geometric match to IL_3DD2_004
- Geometric discrepancy: 0.3789
- The information below is about IL_3DD2_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_55516.2
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 7
Unit IDs
7O7Z|1|B5|U|4214
7O7Z|1|B5|U|4215
7O7Z|1|B5|G|4216
*
7O7Z|1|B5|C|4231
7O7Z|1|B5|C|4232
7O7Z|1|B5|A|4233
7O7Z|1|B5|A|4234
7O7Z|1|B5|G|4235
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BH
- 60S ribosomal protein L9
- Chain BO
- Ribosomal protein uL13
- Chain Bm
- 60S ribosomal protein L40
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