3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UUG*CCAAG
Length
8 nucleotides
Bulged bases
7O7Z|1|B5|A|4234
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_258 not in the Motif Atlas
Geometric match to IL_3DD2_004
Geometric discrepancy: 0.3789
The information below is about IL_3DD2_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_55516.2
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
7

Unit IDs

7O7Z|1|B5|U|4214
7O7Z|1|B5|U|4215
7O7Z|1|B5|G|4216
*
7O7Z|1|B5|C|4231
7O7Z|1|B5|C|4232
7O7Z|1|B5|A|4233
7O7Z|1|B5|A|4234
7O7Z|1|B5|G|4235

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BH
60S ribosomal protein L9
Chain BO
Ribosomal protein uL13
Chain Bm
60S ribosomal protein L40

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1785 s