IL_7O7Z_273

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7O7Z|1|B5|A|4454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_273 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2357

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7O7Z|1|B5|G|4426
7O7Z|1|B5|A|4427
7O7Z|1|B5|U|4428
7O7Z|1|B5|U|4429
7O7Z|1|B5|A|4430
7O7Z|1|B5|U|4431
*
7O7Z|1|B5|A|4451
7O7Z|1|B5|G|4452
7O7Z|1|B5|A|4453
7O7Z|1|B5|A|4454
7O7Z|1|B5|U|4455
7O7Z|1|B5|C|4456

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Ribosomal protein uL13

Chain Bm

60S ribosomal protein L40