IL_7O7Z_289
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CA*UCG
- Length
- 5 nucleotides
- Bulged bases
- 7O7Z|1|B7|C|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_289 not in the Motif Atlas
- Homologous match to IL_5TBW_372
- Geometric discrepancy: 0.1578
- The information below is about IL_5TBW_372
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
7O7Z|1|B7|C|15
7O7Z|1|B7|A|16
*
7O7Z|1|B7|U|62
7O7Z|1|B7|C|63
7O7Z|1|B7|G|64
Current chains
- Chain B7
- 5S
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BI
- 60S ribosomal protein L10
- Chain BJ
- Ribosomal protein L11
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