3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CA*UCG
Length
5 nucleotides
Bulged bases
7O7Z|1|B7|C|63
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_289 not in the Motif Atlas
Homologous match to IL_5TBW_372
Geometric discrepancy: 0.1578
The information below is about IL_5TBW_372
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
127

Unit IDs

7O7Z|1|B7|C|15
7O7Z|1|B7|A|16
*
7O7Z|1|B7|U|62
7O7Z|1|B7|C|63
7O7Z|1|B7|G|64

Current chains

Chain B7
5S

Nearby chains

Chain B5
Large subunit ribosomal RNA; LSU rRNA
Chain BD
Ribosomal_L18_c domain-containing protein
Chain BI
60S ribosomal protein L10
Chain BJ
Ribosomal protein L11

Coloring options:


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