IL_7O7Z_293
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_293 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2979
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
7O7Z|1|B7|G|71
7O7Z|1|B7|U|72
7O7Z|1|B7|U|73
7O7Z|1|B7|A|74
7O7Z|1|B7|G|75
7O7Z|1|B7|U|76
7O7Z|1|B7|A|77
7O7Z|1|B7|C|78
*
7O7Z|1|B7|G|98
7O7Z|1|B7|G|99
7O7Z|1|B7|A|100
7O7Z|1|B7|A|101
7O7Z|1|B7|U|102
7O7Z|1|B7|A|103
7O7Z|1|B7|C|104
Current chains
- Chain B7
- 5S
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BF
- Ribosomal Protein uL30
- Chain BI
- 60S ribosomal protein L10
- Chain BS
- Ribosomal protein eL20
- Chain BT
- eL21
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