IL_7O7Z_298

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

(PSU)C(PSU)*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_298 not in the Motif Atlas

Homologous match to IL_8C3A_393

Geometric discrepancy: 0.3181

The information below is about IL_8C3A_393

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7O7Z|1|A2|PSU|34
7O7Z|1|A2|C|35
7O7Z|1|A2|PSU|36
*
7O7Z|1|A2|A|520
7O7Z|1|A2|A|521
7O7Z|1|A2|A|522

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

Ribosomal protein S9 (Predicted)