IL_7O7Z_300

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

7O7Z|1|A2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_300 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.0943

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7O7Z|1|A2|G|145
7O7Z|1|A2|G|146
7O7Z|1|A2|A|147
7O7Z|1|A2|U|148
7O7Z|1|A2|A|149
7O7Z|1|A2|A|150
7O7Z|1|A2|C|151
*
7O7Z|1|A2|G|167
7O7Z|1|A2|C|168
7O7Z|1|A2|U|169
7O7Z|1|A2|A|170
7O7Z|1|A2|A|171
7O7Z|1|A2|OMU|172
7O7Z|1|A2|A|173
7O7Z|1|A2|OMC|174

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24

Chain BW

eL24