IL_7O7Z_316
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- (PSU)GG*CGA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_316 not in the Motif Atlas
- Homologous match to IL_8P9A_442
- Geometric discrepancy: 0.3005
- The information below is about IL_8P9A_442
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
7O7Z|1|A2|PSU|1348
7O7Z|1|A2|G|1349
7O7Z|1|A2|G|1350
*
7O7Z|1|A2|C|1381
7O7Z|1|A2|G|1382
7O7Z|1|A2|A|1383
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AZ
- 40S ribosomal protein SA
- Chain Ab
- Ribosomal protein uS5
- Chain Ac
- 40S ribosomal protein S3
- Chain Aq
- 40S ribosomal protein eS17
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