3D structure

PDB id
7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CAUGC*(OMG)AGG
Length
9 nucleotides
Bulged bases
7O7Z|1|A2|U|1398
QA status
Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7O7Z_317 not in the Motif Atlas
Geometric match to IL_8P9A_419
Geometric discrepancy: 0.3669
The information below is about IL_8P9A_419
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

7O7Z|1|A2|C|1396
7O7Z|1|A2|A|1397
7O7Z|1|A2|U|1398
7O7Z|1|A2|G|1399
7O7Z|1|A2|C|1400
*
7O7Z|1|A2|OMG|1448
7O7Z|1|A2|A|1449
7O7Z|1|A2|G|1450
7O7Z|1|A2|G|1451

Current chains

Chain A2
18S rRNA

Nearby chains

Chain AF
RACK1
Chain Ap
uS9
Chain Aq
40S ribosomal protein eS17
Chain At
40S ribosomal protein uS10

Coloring options:


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