IL_7O7Z_317
3D structure
- PDB id
- 7O7Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- CAUGC*(OMG)AGG
- Length
- 9 nucleotides
- Bulged bases
- 7O7Z|1|A2|U|1398
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O7Z_317 not in the Motif Atlas
- Geometric match to IL_8P9A_419
- Geometric discrepancy: 0.3669
- The information below is about IL_8P9A_419
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
7O7Z|1|A2|C|1396
7O7Z|1|A2|A|1397
7O7Z|1|A2|U|1398
7O7Z|1|A2|G|1399
7O7Z|1|A2|C|1400
*
7O7Z|1|A2|OMG|1448
7O7Z|1|A2|A|1449
7O7Z|1|A2|G|1450
7O7Z|1|A2|G|1451
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AF
- RACK1
- Chain Ap
- uS9
- Chain Aq
- 40S ribosomal protein eS17
- Chain At
- 40S ribosomal protein uS10
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