IL_7O7Z_320

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAAU*AAAUGUG

Length

12 nucleotides

Bulged bases

7O7Z|1|B5|G|119, 7O7Z|1|B5|U|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|C|118
7O7Z|1|B5|G|119
7O7Z|1|B5|A|120
7O7Z|1|B5|A|121
7O7Z|1|B5|U|122
*
7O7Z|1|B5|A|147
7O7Z|1|B5|A|148
7O7Z|1|B5|A|149
7O7Z|1|B5|U|150
7O7Z|1|B5|G|151
7O7Z|1|B5|U|152
7O7Z|1|B5|G|153

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain BG

Ribosomal protein eL8

Chain BN

Ribosomal protein L15

Chain Bh

uL29