IL_7O7Z_344

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CCCG*CGGCG

Length

9 nucleotides

Bulged bases

7O7Z|1|B5|C|3891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_344 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2928

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7O7Z|1|B5|C|3866
7O7Z|1|B5|C|3867
7O7Z|1|B5|C|3868
7O7Z|1|B5|G|3869
*
7O7Z|1|B5|C|3888
7O7Z|1|B5|G|3889
7O7Z|1|B5|G|3890
7O7Z|1|B5|C|3891
7O7Z|1|B5|G|3892

Current chains

Chain B5

28S rRNA

Nearby chains