IL_7O7Z_347

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGC(PSU)*GA(PSU)CC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_347 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.353

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

7O7Z|1|B5|G|4146
7O7Z|1|B5|G|4147
7O7Z|1|B5|C|4148
7O7Z|1|B5|PSU|4149
*
7O7Z|1|B5|G|4186
7O7Z|1|B5|A|4187
7O7Z|1|B5|PSU|4188
7O7Z|1|B5|C|4189
7O7Z|1|B5|C|4190

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BI

60S ribosomal protein L10

Chain Bb

60S ribosomal protein L29