IL_7O7Z_349

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

(OMC)(PSU)C*G(PSU)G(A2M)G

Length

8 nucleotides

Bulged bases

7O7Z|1|B5|G|4268, 7O7Z|1|B5|A2M|4269

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O7Z_349 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.3475

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7O7Z|1|B5|OMC|4202
7O7Z|1|B5|PSU|4203
7O7Z|1|B5|C|4204
*
7O7Z|1|B5|G|4266
7O7Z|1|B5|PSU|4267
7O7Z|1|B5|G|4268
7O7Z|1|B5|A2M|4269
7O7Z|1|B5|G|4270

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BK

Replicase polyprotein 1ab

Chain BV

Ribosomal protein L23