IL_7O7Z_350

3D structure

PDB id

7O7Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled close to the mutated SARS-CoV-2 slippery site by a pseudoknot (classified for pseudoknot)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAUUG*CCAAGCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O7Z|1|B5|C|4212
7O7Z|1|B5|A|4213
7O7Z|1|B5|U|4214
7O7Z|1|B5|U|4215
7O7Z|1|B5|G|4216
*
7O7Z|1|B5|C|4231
7O7Z|1|B5|C|4232
7O7Z|1|B5|A|4233
7O7Z|1|B5|A|4234
7O7Z|1|B5|G|4235
7O7Z|1|B5|C|4236
7O7Z|1|B5|G|4237

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BH

60S ribosomal protein L9

Chain BO

Ribosomal protein uL13

Chain BV

Ribosomal protein L23

Chain Bm

60S ribosomal protein L40