IL_7O80_055

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAC*GUCUUUGG

Length

12 nucleotides

Bulged bases

7O80|1|A2|C|1154, 7O80|1|A2|U|1156, 7O80|1|A2|G|1158

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O80|1|A2|C|1092
7O80|1|A2|G|1093
7O80|1|A2|A|1094
7O80|1|A2|C|1095
*
7O80|1|A2|G|1152
7O80|1|A2|U|1153
7O80|1|A2|C|1154
7O80|1|A2|U|1155
7O80|1|A2|U|1156
7O80|1|A2|U|1157
7O80|1|A2|G|1158
7O80|1|A2|G|1159

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain Ab

Ribosomal protein uS5

Chain Ak

40S ribosomal protein S11

Chain Am

uS15

Chain Av

Ribosomal protein S15a

Chain Aw

40S ribosomal protein S23