IL_7O80_119
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_119 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0761
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
7O80|1|B5|G|415
7O80|1|B5|U|416
7O80|1|B5|G|417
7O80|1|B5|A|418
7O80|1|B5|A|419
7O80|1|B5|A|420
7O80|1|B5|C|421
*
7O80|1|B8|G|13
7O80|1|B8|U|14
7O80|1|B8|G|15
7O80|1|B8|G|16
7O80|1|B8|A|17
7O80|1|B8|U|18
7O80|1|B8|C|19
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BK
- Replicase polyprotein 1ab
- Chain BP
- uL22
- Chain Be
- eL32
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