IL_7O80_138

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AAGG*CAGCAGCAGCU

Length

15 nucleotides

Bulged bases

7O80|1|B5|A|831, 7O80|1|B5|A|834, 7O80|1|B5|C|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O80|1|B5|A|726
7O80|1|B5|A|727
7O80|1|B5|G|728
7O80|1|B5|G|729
*
7O80|1|B5|C|827
7O80|1|B5|A|828
7O80|1|B5|G|829
7O80|1|B5|C|830
7O80|1|B5|A|831
7O80|1|B5|G|832
7O80|1|B5|C|833
7O80|1|B5|A|834
7O80|1|B5|G|835
7O80|1|B5|C|836
7O80|1|B5|U|837

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BM

Ribosomal protein L14

Chain BS

Ribosomal protein L18a