IL_7O80_154

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_154 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.1782

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

7O80|1|B5|C|1386
7O80|1|B5|G|1387
7O80|1|B5|A|1388
7O80|1|B5|G|1389
*
7O80|1|B5|C|1405
7O80|1|B5|G|1406
7O80|1|B5|A|1407
7O80|1|B5|G|1408

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

Ribosomal protein L18