IL_7O80_169
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGU*AU
- Length
- 5 nucleotides
- Bulged bases
- 7O80|1|B5|G|1663
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_169 not in the Motif Atlas
- Homologous match to IL_8C3A_040
- Geometric discrepancy: 0.1276
- The information below is about IL_8C3A_040
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 49
Unit IDs
7O80|1|B5|A|1662
7O80|1|B5|G|1663
7O80|1|B5|U|1664
*
7O80|1|B5|A|1777
7O80|1|B5|U|1778
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BF
- Ribosomal Protein uL30
- Chain BQ
- Ribosomal protein L18
- Chain BT
- eL21
- Chain Bb
- 60S ribosomal protein L29
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