IL_7O80_244

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

7O80|1|B5|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_244 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.192

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7O80|1|B5|G|4037
7O80|1|B5|A|4038
7O80|1|B5|PSU|4039
7O80|1|B5|C|4040
*
7O80|1|B5|G|4062
7O80|1|B5|A|4063
7O80|1|B5|C|4064

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BT

eL21

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42