IL_7O80_250
3D structure
- PDB id
- 7O80 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O80_250 not in the Motif Atlas
- Homologous match to IL_8C3A_114
- Geometric discrepancy: 0.1485
- The information below is about IL_8C3A_114
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65585.1
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
7O80|1|B5|C|4158
7O80|1|B5|C|4159
7O80|1|B5|A|4160
7O80|1|B5|A|4161
7O80|1|B5|G|4162
*
7O80|1|B5|C|4172
7O80|1|B5|G|4173
7O80|1|B5|A|4174
7O80|1|B5|C|4175
7O80|1|B5|G|4176
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BI
- 60S ribosomal protein L10
- Chain Bm
- 60S ribosomal protein L40
- Chain By
- Eukaryotic peptide chain release factor subunit 1
Coloring options: