IL_7O80_288

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCC*GGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_288 not in the Motif Atlas

Homologous match to IL_4WF9_114

Geometric discrepancy: 0.1354

The information below is about IL_4WF9_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10810.1

Basepair signature

cWW-L-cWS-cSH-cWW

Number of instances in this motif group

1

Unit IDs

7O80|1|B7|C|28
7O80|1|B7|C|29
7O80|1|B7|C|30
*
7O80|1|B7|G|47
7O80|1|B7|G|48
7O80|1|B7|A|49
7O80|1|B7|A|50
7O80|1|B7|G|51

Current chains

Chain B7

5S rRNA

Nearby chains

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BJ

Ribosomal protein L11