IL_7O80_300

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAU*(A2M)AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_300 not in the Motif Atlas

Homologous match to IL_8C3A_414

Geometric discrepancy: 0.147

The information below is about IL_8C3A_414

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_42997.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

7O80|1|A2|C|460
7O80|1|A2|A|461
7O80|1|A2|U|462
*
7O80|1|A2|A2M|469
7O80|1|A2|A|470
7O80|1|A2|G|471

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain BV

Ribosomal protein L23

Chain Bz

ATP binding cassette subfamily E member 1