IL_7O80_345

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGUGUAGAAUAA*UACU

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O80|1|B5|A|3686
7O80|1|B5|G|3687
7O80|1|B5|G|3688
7O80|1|B5|U|3689
7O80|1|B5|G|3690
7O80|1|B5|U|3691
7O80|1|B5|A|3692
7O80|1|B5|G|3693
7O80|1|B5|A|3694
7O80|1|B5|A|3695
7O80|1|B5|U|3696
7O80|1|B5|A|3697
7O80|1|B5|A|3698
*
7O80|1|B5|U|3783
7O80|1|B5|A|3784
7O80|1|B5|C|3785
7O80|1|B5|U|3786

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AI

E-site tRNA

Chain Aa

40S ribosomal protein S3a

Chain Bv

Ribosomal protein