IL_7O80_347

3D structure

PDB id

7O80 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1 and ABCE1 stalled at the STOP codon in the mutated SARS-CoV-2 slippery site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

7O80|1|B5|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O80_347 not in the Motif Atlas

Homologous match to IL_8GLP_309

Geometric discrepancy: 0.1223

The information below is about IL_8GLP_309

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

7O80|1|B5|G|4037
7O80|1|B5|A|4038
7O80|1|B5|PSU|4039
*
7O80|1|B5|A|4063
7O80|1|B5|C|4064

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bb

60S ribosomal protein L29

Chain Bo

eL42