3D structure

PDB id
7O81 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUGAC*GGA(PSU)G
Length
10 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

7O81|1|A2|C|188
7O81|1|A2|U|189
7O81|1|A2|G|190
7O81|1|A2|A|191
7O81|1|A2|C|192
*
7O81|1|A2|G|207
7O81|1|A2|G|208
7O81|1|A2|A|209
7O81|1|A2|PSU|210
7O81|1|A2|G|211

Current chains

Chain A2
18S rRNA

Nearby chains

Chain Ah
40S ribosomal protein S8

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.3679 s