IL_7O81_016

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAC*GGA(PSU)G

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_016 not in the Motif Atlas

Geometric match to IL_8GLP_204

Geometric discrepancy: 0.3834

The information below is about IL_8GLP_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

7O81|1|A2|C|188
7O81|1|A2|U|189
7O81|1|A2|G|190
7O81|1|A2|A|191
7O81|1|A2|C|192
*
7O81|1|A2|G|207
7O81|1|A2|G|208
7O81|1|A2|A|209
7O81|1|A2|PSU|210
7O81|1|A2|G|211

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8