IL_7O81_022

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_022 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1505

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7O81|1|A2|G|412
7O81|1|A2|G|413
7O81|1|A2|G|414
*
7O81|1|A2|C|425
7O81|1|A2|G|426
7O81|1|A2|A|427
7O81|1|A2|U|428
7O81|1|A2|OMU|429
7O81|1|A2|C|430

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ai

Ribosomal protein S9 (Predicted)

Chain Aw

40S ribosomal protein S23