IL_7O81_029
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AG(OMG)GCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- 7O81|1|A2|G|601
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_029 not in the Motif Atlas
- Geometric match to IL_4V88_413
- Geometric discrepancy: 0.1033
- The information below is about IL_4V88_413
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.1
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 10
Unit IDs
7O81|1|A2|A|600
7O81|1|A2|G|601
7O81|1|A2|OMG|602
7O81|1|A2|G|603
7O81|1|A2|C|604
7O81|1|A2|A|605
7O81|1|A2|A|606
7O81|1|A2|G|607
*
7O81|1|A2|C|637
7O81|1|A2|U|638
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AD
- 40S ribosomal protein S30
- Chain AU
- EDF1
- Chain Ab
- Ribosomal protein uS5
- Chain Ac
- 40S ribosomal protein S3
- Chain Ai
- Ribosomal protein S9 (Predicted)
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