IL_7O81_039

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCU*AGC

Length

7 nucleotides

Bulged bases

7O81|1|A2|C|747

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_039 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.184

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

7O81|1|A2|G|745
7O81|1|A2|C|746
7O81|1|A2|C|747
7O81|1|A2|U|748
*
7O81|1|A2|A|796
7O81|1|A2|G|797
7O81|1|A2|C|798

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

Ribosomal protein eS4

Chain Ag

40S ribosomal protein S7

Chain Ak

40S ribosomal protein S11