IL_7O81_056
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 7O81|1|A2|C|1154, 7O81|1|A2|U|1156, 7O81|1|A2|G|1158
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_056 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.144
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7O81|1|A2|C|1092
7O81|1|A2|G|1093
7O81|1|A2|A|1094
*
7O81|1|A2|U|1153
7O81|1|A2|C|1154
7O81|1|A2|U|1155
7O81|1|A2|U|1156
7O81|1|A2|U|1157
7O81|1|A2|G|1158
7O81|1|A2|G|1159
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein S27
- Chain Ab
- Ribosomal protein uS5
- Chain Ak
- 40S ribosomal protein S11
- Chain Am
- uS15
- Chain Av
- Ribosomal protein S15a
- Chain Aw
- 40S ribosomal protein S23
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