IL_7O81_057
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAU*GCAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_057 not in the Motif Atlas
- Homologous match to IL_4V88_438
- Geometric discrepancy: 0.1458
- The information below is about IL_4V88_438
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
7O81|1|A2|C|1099
7O81|1|A2|G|1100
7O81|1|A2|A|1101
7O81|1|A2|U|1102
*
7O81|1|A2|G|1132
7O81|1|A2|C|1133
7O81|1|A2|A|1134
7O81|1|A2|G|1135
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AA
- 40S ribosomal protein S27
- Chain AE
- Ribosomal protein eS26
- Chain AZ
- 40S ribosomal protein SA
- Chain Aa
- 40S ribosomal protein S3a
- Chain Am
- uS15
- Chain Aq
- 40S ribosomal protein eS17
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