IL_7O81_065

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*U(PSU)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_065 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2646

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

7O81|1|A2|G|1223
7O81|1|A2|A|1224
7O81|1|A2|G|1225
*
7O81|1|A2|U|1643
7O81|1|A2|PSU|1644
7O81|1|A2|C|1645

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Ae

Ribosomal protein S5

Chain Ap

uS9