IL_7O81_097

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_097 not in the Motif Atlas

Homologous match to IL_4V88_474

Geometric discrepancy: 0.2033

The information below is about IL_4V88_474

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

7O81|1|A2|C|1743
7O81|1|A2|G|1744
7O81|1|A2|G|1745
7O81|1|A2|A|1746
7O81|1|A2|U|1747
*
7O81|1|A2|A|1789
7O81|1|A2|G|1790
7O81|1|A2|A|1791
7O81|1|A2|A|1792
7O81|1|A2|G|1793

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain BW

eL24