IL_7O81_111

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_111 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.1985

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

7O81|1|B5|G|179
7O81|1|B5|C|180
7O81|1|B5|C|181
*
7O81|1|B5|G|256
7O81|1|B5|C|257

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Ribosomal protein eL13

Chain Bh

uL29