IL_7O81_124

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

7O81|1|B5|U|467, 7O81|1|B5|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|A|466
7O81|1|B5|U|467
7O81|1|B5|U|468
7O81|1|B5|C|469
7O81|1|B5|A|470
7O81|1|B5|A|471
7O81|1|B5|C|472
*
7O81|1|B5|G|676
7O81|1|B5|C|677
7O81|1|B5|G|678
7O81|1|B5|C|679
7O81|1|B5|A|680
7O81|1|B5|U|681
7O81|1|B5|U|682
7O81|1|B5|U|683

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain Br

Ribosomal protein eL28