IL_7O81_139

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

7O81|1|B5|G|743, 7O81|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_139 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.2452

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7O81|1|B5|G|740
7O81|1|B5|A|741
7O81|1|B5|A|742
7O81|1|B5|G|743
7O81|1|B5|G|744
7O81|1|B5|U|745
7O81|1|B5|G|746
7O81|1|B5|G|747
*
7O81|1|B5|U|808
7O81|1|B5|G|809
7O81|1|B5|U|810
7O81|1|B5|U|811
7O81|1|B5|A|812
7O81|1|B5|C|813
7O81|1|B5|A|814
7O81|1|B5|G|815
7O81|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

Ribosomal protein L14

Chain BS

Ribosomal protein L18a