IL_7O81_152

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_152 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2966

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7O81|1|B5|G|1380
7O81|1|B5|G|1381
7O81|1|B5|A|1382
7O81|1|B5|U|1383
7O81|1|B5|C|1384
*
7O81|1|B5|G|1410
7O81|1|B5|C|1411
7O81|1|B5|G|1412
7O81|1|B5|C|1413
7O81|1|B5|A|1414
7O81|1|B5|C|1415

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

Ribosomal protein L18

Chain Bb

60S ribosomal protein L29