IL_7O81_164

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

7O81|1|B5|A|1592, 7O81|1|B5|A|1593

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_164 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0983

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7O81|1|B5|G|1579
7O81|1|B5|OMG|1580
7O81|1|B5|G|1581
*
7O81|1|B5|U|1591
7O81|1|B5|A|1592
7O81|1|B5|A|1593
7O81|1|B5|U|1594
7O81|1|B5|C|1595

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Ribosomal protein uL2

Chain BK

Replicase polyprotein 1ab

Chain BN

Ribosomal protein L15

Chain BP

uL22

Chain Bj

Ribosomal protein L37