IL_7O81_171

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAGAG*C(PSU)A(PSU)(PSU)CUC

Length

16 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7O81|1|B5|G|1684
7O81|1|B5|A|1685
7O81|1|B5|U|1686
7O81|1|B5|U|1687
7O81|1|B5|A|1688
7O81|1|B5|G|1689
7O81|1|B5|A|1690
7O81|1|B5|G|1691
*
7O81|1|B5|C|1717
7O81|1|B5|PSU|1718
7O81|1|B5|A|1719
7O81|1|B5|PSU|1720
7O81|1|B5|PSU|1721
7O81|1|B5|C|1722
7O81|1|B5|U|1723
7O81|1|B5|C|1724

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AJ

Transfer RNA; tRNA

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BI

60S ribosomal protein L10