IL_7O81_193
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 7O81|1|B5|A|2355, 7O81|1|B5|A|2356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_193 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1094
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
7O81|1|B5|C|2289
7O81|1|B5|U|2290
7O81|1|B5|G|2291
7O81|1|B5|A|2292
7O81|1|B5|G|2293
*
7O81|1|B5|C|2352
7O81|1|B5|G|2353
7O81|1|B5|A|2354
7O81|1|B5|A|2355
7O81|1|B5|A|2356
7O81|1|B5|G|2357
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- Ribosomal protein uL2
- Chain Bg
- 60S ribosomal protein L34
- Chain Bj
- Ribosomal protein L37
- Chain Bl
- eL39
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