IL_7O81_237

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_237 not in the Motif Atlas

Geometric match to IL_3U4M_003

Geometric discrepancy: 0.1378

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7O81|1|B5|G|3702
7O81|1|B5|G|3703
7O81|1|B5|A|3704
7O81|1|B5|G|3705
*
7O81|1|B5|C|3766
7O81|1|B5|G|3767
7O81|1|B5|C|3768
7O81|1|B5|C|3769
7O81|1|B5|G|3770
7O81|1|B5|G|3771
7O81|1|B5|U|3772
7O81|1|B5|G|3773
7O81|1|B5|A|3774
7O81|1|B5|A|3775
7O81|1|B5|A|3776
7O81|1|B5|U|3777
7O81|1|B5|A|3778
7O81|1|B5|C|3779

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Ay

40S ribosomal protein S25

Chain Bv

Ribosomal protein uL1