IL_7O81_245
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- U(PSU)GA(PSU)U*AA(PSU)ACA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_245 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.2932
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
7O81|1|B5|U|4041
7O81|1|B5|PSU|4042
7O81|1|B5|G|4043
7O81|1|B5|A|4044
7O81|1|B5|PSU|4045
7O81|1|B5|U|4046
*
7O81|1|B5|A|4056
7O81|1|B5|A|4057
7O81|1|B5|PSU|4058
7O81|1|B5|A|4059
7O81|1|B5|C|4060
7O81|1|B5|A|4061
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BD
- Ribosomal_L18_c domain-containing protein
- Chain BQ
- Ribosomal protein L18
- Chain BT
- eL21
- Chain Bb
- 60S ribosomal protein L29
- Chain Bo
- eL42
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