IL_7O81_248

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

7O81|1|B5|U|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_248 not in the Motif Atlas

Geometric match to IL_5TBW_105

Geometric discrepancy: 0.0843

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

7O81|1|B5|G|4151
7O81|1|B5|U|4152
7O81|1|B5|G|4153
*
7O81|1|B5|U|4181
7O81|1|B5|U|4182
7O81|1|B5|U|4183
7O81|1|B5|U|4184
7O81|1|B5|U|4185

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AJ

Transfer RNA; tRNA

Chain BB

Ribosomal protein L3

Chain BI

60S ribosomal protein L10