IL_7O81_270

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

7O81|1|B5|A|4454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_270 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2372

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7O81|1|B5|G|4426
7O81|1|B5|A|4427
7O81|1|B5|U|4428
7O81|1|B5|U|4429
7O81|1|B5|A|4430
7O81|1|B5|U|4431
*
7O81|1|B5|A|4451
7O81|1|B5|G|4452
7O81|1|B5|A|4453
7O81|1|B5|A|4454
7O81|1|B5|U|4455
7O81|1|B5|C|4456

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9

Chain BO

Ribosomal protein L13a

Chain Bm

60S ribosomal protein L40