IL_7O81_274
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 7O81|1|B5|C|4504, 7O81|1|B5|U|4505, 7O81|1|B5|A|4511, 7O81|1|B5|G|4609, 7O81|1|B5|C|4610, 7O81|1|B5|G|4612, 7O81|1|B5|A|4615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_274 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.5689
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
7O81|1|B5|C|4503
7O81|1|B5|C|4504
7O81|1|B5|U|4505
7O81|1|B5|C|4506
7O81|1|B5|G|4507
7O81|1|B5|G|4508
7O81|1|B5|A|4509
7O81|1|B5|U|4510
7O81|1|B5|A|4511
7O81|1|B5|G|4512
7O81|1|B5|C|4513
*
7O81|1|B5|G|4607
7O81|1|B5|U|4608
7O81|1|B5|G|4609
7O81|1|B5|C|4610
7O81|1|B5|G|4611
7O81|1|B5|G|4612
7O81|1|B5|A|4613
7O81|1|B5|G|4614
7O81|1|B5|A|4615
7O81|1|B5|G|4616
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BE
- 60S ribosomal protein L6
- Chain BH
- 60S ribosomal protein L9
- Chain BM
- Ribosomal protein L14
- Chain BO
- Ribosomal protein L13a
- Chain BS
- Ribosomal protein L18a
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