IL_7O81_289

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_289 not in the Motif Atlas

Homologous match to IL_7RQB_114

Geometric discrepancy: 0.1271

The information below is about IL_7RQB_114

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.6

Basepair signature

cWW-cWS-L-tSW-L-cWW

Number of instances in this motif group

8

Unit IDs

7O81|1|B7|A|32
7O81|1|B7|U|33
7O81|1|B7|C|34
7O81|1|B7|U|35
7O81|1|B7|C|36
*
7O81|1|B7|G|41
7O81|1|B7|A|42
7O81|1|B7|U|43
7O81|1|B7|C|44
7O81|1|B7|U|45

Current chains

Chain B7

5S rRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BD

Ribosomal_L18_c domain-containing protein

Chain BJ

Ribosomal protein L11