IL_7O81_293
3D structure
- PDB id
- 7O81 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAAU*AUCGA
- Length
- 9 nucleotides
- Bulged bases
- 7O81|1|B8|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7O81_293 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.378
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93503.1
- Basepair signature
- cWW-cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
7O81|1|B8|U|64
7O81|1|B8|A|65
7O81|1|B8|A|66
7O81|1|B8|U|67
*
7O81|1|B8|A|91
7O81|1|B8|U|92
7O81|1|B8|C|93
7O81|1|B8|G|94
7O81|1|B8|A|95
Current chains
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BY
- Ribosomal protein L26
- Chain Bh
- uL29
- Chain Bj
- Ribosomal protein L37
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