IL_7O81_297

3D structure

PDB id

7O81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome colliding in another ribosome stalled by the SARS-CoV-2 pseudoknot

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

7O81|1|A2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7O81_297 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1103

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

7O81|1|A2|G|145
7O81|1|A2|G|146
7O81|1|A2|A|147
7O81|1|A2|U|148
7O81|1|A2|A|149
7O81|1|A2|A|150
7O81|1|A2|C|151
*
7O81|1|A2|G|167
7O81|1|A2|C|168
7O81|1|A2|U|169
7O81|1|A2|A|170
7O81|1|A2|A|171
7O81|1|A2|OMU|172
7O81|1|A2|A|173
7O81|1|A2|OMC|174

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ax

40S ribosomal protein S24

Chain BW

eL24